Jupyter Notebook Setup Guide for BGU HPC Cluster

Introduction

This guide explains the one-time setup required to configure a Jupyter Notebook workspace on the BGU HPC cluster. Once configured, you can refer to refer to the streamlined usage guide.

Prerequisites

  • Have access to the BGU HPC cluster with VPN/internal network.

Installing the Jupyter Kernel on your Environment

Once you have configured a Conda environment to your liking, you need to install the Jupyter Kernel on that environment.

Just like creating an environment, any interactions with the conda executable can only be done from inside a workload.

You can use the Jupyter Notebook workspace for that.

  1. Activate your Anaconda environment

    $ conda activate <your-env>

  2. Install the IPykernel

    $ conda install ipykernel

  3. Install the kernel for the for Jupyter Notebook

    $ python -m ipykernel install --user --name=<your-env>